Basic Information
Locus ID:
AH01.2593
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 36453712 | 36471586 | - | AH01.2593 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 130,619.43 Da | 38.64 | 75.09 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 46 | 321 | 3.29675E-173 | - |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 45 | 356 | 2.2E-94 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 609 | 820 | 1.1E-52 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 363 | 452 | 1.9E-16 | IPR015341 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 361 | 456 | 4.58E-25 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 38 | 359 | 8.06E-110 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 462 | 973 | 7.38E-139 | IPR011013 |
| Gene3D | G3DSA:2.60.40.1180 | - | 470 | 581 | 3.0E-22 | IPR013780 |
| Gene3D | G3DSA:2.70.98.30 | - | 604 | 869 | 1.1E-100 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 326 | 404 | 2.4E-29 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 890 | 992 | 3.5E-23 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 44 | 325 | 4.0E-117 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 405 | 460 | 2.9E-18 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 362 | 436 | 4.3E-18 | IPR015341 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1106 | 1130 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_012704498.1 | LOW QUALITY PROTEIN: alpha-mannosidase-like [Setaria italica] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3IMS7 | Alpha-mannosidase OS=Panicum hallii OX=206008 GN=PAHAL_9G343700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology