Basic Information
Locus ID:
AH01.2526
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 34677079 | 34683869 | + | AH01.2526 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 153,524.77 Da | 39.54 | 101.75 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 1175 | 1291 | 1.5E-22 | - |
| Pfam | PF00069 | Protein kinase domain | 861 | 1058 | 3.1E-40 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 32 | 78 | 6.0E-4 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 693 | 749 | 8.5E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 254 | 313 | 1.8E-10 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 156 | 216 | 4.3E-9 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 415 | 760 | 2.51E-56 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 86 | 410 | 1.02E-63 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 844 | 1115 | 3.28E-63 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 154 | 227 | 2.6E-18 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 931 | 1124 | 3.9E-46 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 397 | 786 | 3.7E-107 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 228 | 396 | 1.8E-52 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 153 | 1.4E-19 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 822 | 930 | 1.7E-16 | - |
| SMART | SM00369 | LRR_typ_2 | 181 | 205 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 591 | 615 | 390.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 252 | 275 | 51.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 107 | 131 | 340.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 276 | 300 | 30.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 859 | 1148 | 2.8E-29 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 495 | 518 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 444 | 468 | 58.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 712 | 736 | 34.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 396 | 420 | 140.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 254 | 276 | 7.44243 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 859 | 1148 | 33.375336 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 976 | 988 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 865 | 887 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 712 | 725 | 1.1E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 184 | 197 | 1.1E-5 | - |
| Coils | Coil | Coil | 1144 | 1164 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73080.1 | PEP1 receptor 1. Encodes a leucine-rich repeat receptor kinase. Functions as a receptor for AtPep1 to amplify innate immunity response to pathogen attacks. | 9.21E-64 |
| RefSeq | XP_025791859.1 | leucine-rich repeat receptor-like protein kinase PEPR2 [Panicum hallii] | 1.21E-248 |
| Q9SSL9 | Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana OX=3702 GN=PEPR1 PE=1 SV=1 | 9.1E-63 | |
| TrEMBL | A0A3L6TLN2 | Putative leucine-rich repeat receptor-like protein kinase OS=Panicum miliaceum OX=4540 GN=C2845_PM01G43380 PE=3 SV=1 | 2.57E-263 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2137 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30166990 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G009110 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711259, gene-LOC120108963 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1110.V1.1 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g19500 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1251 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00011074, Pov_00034559 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2526, AH01.2527, BH01.2855, BH01.2857, CH01.3064 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0120090, gene-QOZ80_2AG0120110 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0108800.1, HORVU.MOREX.r3.5HG0480440.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005384, gene-QYE76_045167, gene-QYE76_045217 |
| Poaceae | Oryza coarctata | 2 | Oco20G001010, Oco20G001020 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g06740.1, LOC_Os10g06760.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G254700, gene-BS78_01G254800 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0301897, Pt_Chr0301916, Pt_Chr0301917, Pt_Chr0701996 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr15G016710 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G197400, Tel5E01G350100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG010300, gene_TRIDC5AG034110 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G090100.1.cds1, TraesCS2B02G105800.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb026550_P001, Zm00001eb034800_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-42998 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13073 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g08480 |
| Salicaceae | Populus euphratica | 1 | populus_peu29401 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132631233, gene-LOC132632151, gene-LOC132632152 |
| Solanaceae | Solanum chilense | 2 | SOLCI004878800, SOLCI004878900 |
| Zosteraceae | Zostera marina | 1 | Zosma01g26240.v3.1 |