Basic Information
Locus ID:
AH01.2178
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
CHASE domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 24165945 | 24168053 | - | AH01.2178 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.46 | 68,536.18 Da | 43.94 | 84.30 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03924 | CHASE domain | 147 | 296 | 3.1E-21 | IPR006189 |
| Gene3D | G3DSA:3.30.450.350 | CHASE domain | 148 | 336 | 3.4E-44 | IPR042240 |
| Gene3D | G3DSA:6.10.250.1190 | - | 95 | 147 | 2.5E-25 | - |
| SMART | SM01079 | CHASE_2 | 144 | 304 | 1.3E-8 | IPR006189 |
| ProSiteProfiles | PS50839 | CHASE domain profile. | 179 | 329 | 22.072969 | IPR006189 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G27320.1 | histidine kinase 3. Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2. | 3.0E-87 |
| RefSeq | XP_015620760.1 | probable kinase CHARK [Oryza sativa Japonica Group] | 5.74E-163 |
| Q2QRN7 | Probable kinase CHARK OS=Oryza sativa subsp. japonica OX=39947 GN=CHARK PE=2 SV=1 | 3.34E-164 | |
| TrEMBL | A2ZK79 | CHASE domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_38233 PE=4 SV=1 | 7.55E-162 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH01.2178, AH03.790 |
| Poaceae | Oryza coarctata | 1 | Oco23G006040 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g26940.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G114800, gene-BS78_04G115200 |