Basic Information
Locus ID:
AH01.2025
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING finger and CHY zinc finger domain-containing protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 20991560 | 20994987 | - | AH01.2025 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 41,845.98 Da | 52.73 | 50.45 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 130 | 211 | 5.8E-18 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 313 | 371 | 5.8E-27 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 265 | 308 | 1.7E-6 | IPR001841 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 126 | 200 | 1.44E-15 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 265 | 311 | 4.5E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 202 | 259 | 1.96E-18 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 252 | 329 | 2.2E-9 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 337 | 376 | 2.6E-18 | - |
| SMART | SM00184 | ring_2 | 266 | 308 | 1.1E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 123 | 199 | 24.132811 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 266 | 309 | 11.766381 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 201 | 265 | 34.681499 | IPR017921 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 120 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 2.51E-125 |
| RefSeq | XP_004982968.1 | E3 ubiquitin-protein ligase RZFP34 isoform X1 [Setaria italica] | 1.21E-168 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 2.41E-124 | |
| TrEMBL | K4ADV3 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101765663 PE=4 SV=1 | 2.74E-167 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology