Basic Information
Locus ID:
AH01.2016
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DDE superfamily endonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 20835919 | 20839737 | + | AH01.2016 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 80,251.24 Da | 55.51 | 64.69 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13359 | DDE superfamily endonuclease | 559 | 672 | 4.7E-15 | IPR027806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 356 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 389 | - | - |
| Coils | Coil | Coil | 425 | 446 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35695.1 | 2.27E-23 | |
| RefSeq | XP_039817693.1 | putative nuclease HARBI1 [Panicum virgatum] | 4.81E-107 |
| TrEMBL | B9FWG5 | DDE Tnp4 domain-containing protein OS=Oryza sativa subsp. japonica OX=39947 GN=OsJ_23740 PE=4 SV=1 | 4.08E-76 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||