Basic Information
Locus ID:
AH01.2010
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 20732967 | 20736684 | + | AH01.2010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 35,695.14 Da | 65.90 | 65.63 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 144 | 280 | 2.51157E-50 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 148 | 279 | 5.2E-38 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 142 | 285 | 1.02E-44 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 135 | 294 | 2.6E-48 | IPR016135 |
| SMART | SM00212 | ubc_7 | 141 | 285 | 5.4E-52 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 140 | 285 | 42.110455 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 210 | 226 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 297 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41340.1 | ubiquitin conjugating enzyme 4. Belongs to Ubiquitin conjugating enzyme family. Gene expression is developmentally regulated. | 1.37E-101 |
| RefSeq | XP_002467149.1 | ubiquitin-conjugating enzyme E2 4 [Sorghum bicolor] | 5.67E-118 |
| P42748 | Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana OX=3702 GN=UBC4 PE=2 SV=2 | 1.31E-100 | |
| TrEMBL | C4JA79 | UBC core domain-containing protein OS=Zea mays OX=4577 PE=2 SV=1 | 1.83E-117 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology