Basic Information
Locus ID:
AH01.1925
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 19433520 | 19434270 | + | AH01.1925 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 22,237.54 Da | 45.80 | 75.35 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 43 | 136 | 1.33898E-14 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 147 | 198 | 2.7E-11 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 36 | 136 | 1.08E-16 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 141 | 198 | 5.76E-14 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 12 | 133 | 3.9E-18 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 134 | 198 | 5.4E-16 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 149 | 198 | 13.136115 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 17 | 141 | 9.472765 | IPR002083 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.4 | - | 2.55E-20 |
| RefSeq | XP_034570662.1 | BTB/POZ and MATH domain-containing protein 2-like [Setaria viridis] | 1.23E-54 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 6.75E-19 | |
| TrEMBL | A0A835C723 | BTB/POZ and MATH domain-containing protein 1-like OS=Digitaria exilis OX=1010633 GN=HU200_022023 PE=4 SV=1 | 2.88E-74 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH01.1925 |
| Poaceae | Hordeum vulgare | 7 | HORVU.MOREX.r3.1HG0084480.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 17 | gene-QYE76_018116, gene-QYE76_018795, gene-QYE76_018798 ... |
| Poaceae | Oryza sativa | 1 | LOC_Os10g29410.1 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0108068, Pt_Chr0202979, Pt_Chr0203631, Pt_Chr0206738 ... |
| Poaceae | Thinopyrum elongatum | 15 | Tel1E01G617200, Tel1E01G617400, Tel3E01G612800 ... |
| Poaceae | Triticum dicoccoides | 14 | gene_TRIDC1AG055610, gene_TRIDC1AG055620 ... |
| Poaceae | Triticum aestivum | 31 | TraesCS1A02G378700.1.cds1, TraesCS1A02G378800.1.cds1 ... |