Basic Information
Locus ID:
AH01.1833
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Lissencephaly type-1-like homology motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 17746848 | 17752906 | + | AH01.1833 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 54,769.78 Da | 54.88 | 90.33 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 221 | 258 | 2.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 268 | 303 | 3.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 217 | 475 | 1.97E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 210 | 488 | 7.0E-50 | IPR015943 |
| SMART | SM00320 | WD40_4 | 219 | 258 | 1.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 264 | 303 | 8.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 436 | 476 | 54.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 361 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 394 | 432 | 49.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 271 | 312 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 24 | 56 | 8.122498 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 226 | 260 | 10.311051 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 226 | 267 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 271 | 308 | 11.128319 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 6.1E-129 |
| RefSeq | XP_025793452.1 | WD repeat-containing protein WDS homolog [Panicum hallii] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 5.88E-128 | |
| TrEMBL | A0A2T7C5Y9 | LisH domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G221800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology