Basic Information
Locus ID:
AH01.1773
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 16654018 | 16658123 | - | AH01.1773 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 58,781.58 Da | 37.54 | 80.00 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 378 | 444 | 1.06981E-10 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 309 | 369 | 1.17965E-16 | - |
| Pfam | PF00240 | Ubiquitin family | 309 | 372 | 6.7E-16 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 232 | 293 | 1.1E-13 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 450 | 506 | 1.2E-5 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 378 | 445 | 7.9E-6 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 299 | 374 | 5.71E-19 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 232 | 294 | 2.12E-14 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 447 | 507 | 5.18E-9 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 372 | 446 | 3.02E-13 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 444 | 512 | 4.2E-9 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 296 | 375 | 1.3E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 376 | 443 | 4.8E-13 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 229 | 295 | 5.3E-16 | - |
| SMART | SM00213 | ubq_7 | 225 | 296 | 1.0E-10 | IPR000626 |
| SMART | SM00213 | ubq_7 | 299 | 371 | 2.7E-12 | IPR000626 |
| SMART | SM00213 | ubq_7 | 447 | 515 | 12.0 | IPR000626 |
| SMART | SM00213 | ubq_7 | 376 | 446 | 1.2E-5 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 299 | 375 | 18.257881 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 447 | 507 | 10.070333 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 232 | 295 | 13.663273 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 366 | 443 | 13.162439 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 310 | 330 | 5.1E-8 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 331 | 351 | 5.1E-8 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 352 | 373 | 5.1E-8 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 143 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.3 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 1.52E-42 |
| RefSeq | XP_025798348.1 | polyubiquitin-like [Panicum hallii] | 1.43E-144 |
| P0CG82 | Polyubiquitin OS=Tetrahymena pyriformis OX=5908 GN=TU20 PE=3 SV=1 | 3.35E-42 | |
| TrEMBL | A0A3L6S7B3 | Polyubiquitin-like OS=Panicum miliaceum OX=4540 GN=C2845_PM02G11830 PE=4 SV=1 | 9.72E-145 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH01.1773, BH01.2094, CH01.2025, CH01.2026, CH01.2027 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127800, gene-QOZ80_2BG0183260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0042620.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_017527, gene-QYE76_067660 |
| Poaceae | Oryza coarctata | 2 | Oco19G005960, Oco20G005870 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g33620.1, LOC_Os11g18670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G206400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G011030, Chr13G014190 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG028140 |
| Poaceae | Triticum aestivum | 2 | TraesCS1B02G171700.1, TraesCS1D02G151600.1 |
| Poaceae | Zea mays | 1 | Zm00001eb045950_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19226 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16186 |