halophFGD

Basic Information

Locus ID: AH01.1693

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH01	15606253	15614128	-	AH01.1693

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.48	87,039.76 Da	40.28	103.85	0.26

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd13136	MATE_DinF_like	301	770	4.14502E-112	IPR044644
Pfam	PF01554	MatE	587	737	3.3E-12	IPR002528
Pfam	PF01535	PPR repeat	69	99	0.0014	IPR002885
Pfam	PF01554	MatE	433	525	1.1E-11	IPR002528
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	2	164	3.5E-24	IPR011990
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	69	102	1.0E-4	IPR002885
TIGRFAM	TIGR00797	matE: MATE efflux family protein	311	752	6.3E-118	IPR002528
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	67	101	10.588674	IPR002885
MobiDBLite	mobidb-lite	consensus disorder prediction	176	190	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	153	207	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	236	255	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	373	395	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	373	397	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	223	259	-	-

Gene Ontology

Biological Process:

GO:0055085 (transmembrane transport)

Molecular Function:

GO:0005515 (protein binding) GO:0015297 (antiporter activity) GO:0042910 (xenobiotic transmembrane transporter activity)

Cellular Component:

GO:0016020 (membrane)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G51340.2	MATE efflux family protein.	1.35E-184
RefSeq	XP_034576793.1	protein DETOXIFICATION 42-like [Setaria viridis]	1.68E-308
Swiss-Prot	Q9SYD6	Protein DETOXIFICATION 42 OS=Arabidopsis thaliana OX=3702 GN=DTX42 PE=2 SV=2	1.3E-183
TrEMBL	A0A4U6SYA4	Protein DETOXIFICATION OS=Setaria viridis OX=4556 GN=SEVIR_9G203100v2 PE=3 SV=1	3.8E-307

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg15926, jg1615, jg3225, jg35559, jg831
Aizoaceae	Mesembryanthemum crystallinum	6	gene_11636, gene_15233, gene_16421, gene_21549, gene_2693 ... gene_4668
Amaranthaceae	Atriplex hortensis	4	Ah003221, Ah004984, Ah009566, Ah035720
Amaranthaceae	Beta vulgaris	7	BVRB_2g029380, BVRB_2g039950, BVRB_2g039960, BVRB_4g072640 ... BVRB_5g103350, BVRB_9g212790, BVRB_9g212800
Amaranthaceae	Salicornia bigelovii	11	Sbi_jg10971, Sbi_jg1583, Sbi_jg1584, Sbi_jg17991, Sbi_jg4849 ... Sbi_jg21771, Sbi_jg22047, Sbi_jg47374, Sbi_jg62613, Sbi_jg62614, Sbi_jg7249
Amaranthaceae	Salicornia europaea	6	Seu_jg1201, Seu_jg12768, Seu_jg15976, Seu_jg21625 ... Seu_jg3163, Seu_jg3164
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00001476, GOSA_00008593, GOSA_00008594, GOSA_00014424 ... GOSA_00018784, GOSA_00018785
Amaranthaceae	Suaeda glauca	12	Sgl23855, Sgl29026, Sgl51644, Sgl55573, Sgl55576, Sgl56948 ... Sgl56949, Sgl56950, Sgl60790, Sgl60791, Sgl62992, Sgl67614
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000007068, gene:ENSEOMG00000008720 ... gene:ENSEOMG00000015614, gene:ENSEOMG00000017470, gene:ENSEOMG00000019127, gene:ENSEOMG00000023060, gene:ENSEOMG00000023093, gene:ENSEOMG00000024042, gene:ENSEOMG00000028485, gene:ENSEOMG00000039113, gene:ENSEOMG00000040093, gene:ENSEOMG00000052150, gene:ENSEOMG00000052225
Amaranthaceae	Chenopodium quinoa	5	CQ.Regalona.r1.2BG0018680, CQ.Regalona.r1.5AG0010690 ... CQ.Regalona.r1.5BG0011240, CQ.Regalona.r1.7BG0002030, CQ.Regalona.r1.9AG0022750
Anacardiaceae	Pistacia vera	10	pistato.v30053010, pistato.v30060280, pistato.v30108950 ... pistato.v30186900, pistato.v30211960, pistato.v30224020, pistato.v30230360, pistato.v30230380, pistato.v30230390, pistato.v30267850
Apiaceae	Apium graveolens	5	Ag10G00454, Ag11G04480, Ag5G01638, Ag7G01763, Ag9G00826
Arecaceae	Cocos nucifera	5	COCNU_04G003800, COCNU_05G004200, COCNU_05G004280 ... COCNU_13G007900, COCNU_13G008340
Arecaceae	Phoenix dactylifera	5	gene-LOC103697705, gene-LOC103701085, gene-LOC103714367 ... gene-LOC103715922, gene-LOC103715928
Asparagaceae	Asparagus officinalis	5	AsparagusV1_02.327.V1.1, AsparagusV1_07.2539.V1.1 ... AsparagusV1_08.1002.V1.1, AsparagusV1_08.1005.V1.1, AsparagusV1_Unassigned.1131.V1.1
Asteraceae	Flaveria trinervia	7	Ftri12G19210, Ftri12G25575, Ftri12G31133, Ftri12G32800 ... Ftri13G01408, Ftri15G09581, Ftri5G28154
Brassicaceae	Arabidopsis thaliana	4	AT1G51340.2, AT2G38330.1, AT3G08040.1, AT4G38380.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10011401m.g.v1.0, Thhalv10016494m.g.v1.0 ... Thhalv10020489m.g.v1.0, Thhalv10024830m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp1g38000.v2.2, Sp3g06950.v2.2, Sp4g20660.v2.2 ... Sp7g37390.v2.2
Brassicaceae	Brassica nigra	7	BniB01g056030.2N, BniB03g015810.2N, BniB03g023670.2N ... BniB06g029520.2N, BniB07g004580.2N, BniB07g058720.2N, BniB08g024450.2N
Casuarinaceae	Casuarina equisetifolia	7	Ceq04G1086, Ceq05G0470, Ceq05G0471, Ceq05G1908, Ceq07G1855 ... Ceq08G0958, Ceq09G0390
Casuarinaceae	Casuarina glauca	7	Cgl04G1233, Cgl05G0507, Cgl05G0509, Cgl05G1909, Cgl07G2030 ... Cgl08G0977, Cgl09G0430
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno03g01010, gene.Cymno06g11130, gene.Cymno16g04900
Dunaliellaceae	Dunaliella salina	3	Dusal.0007s00004.v1.0, Dusal.0120s00003.v1.0 ... Dusal.0735s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate02g38020, gene.Thate02g38040, gene.Thate02g38050 ... gene.Thate05g07940, gene.Thate11g00050
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-5642, nbisL1-mrna-8448
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.951, evm.TU.LG03.57, evm.TU.LG08.410 ... evm.TU.LG09.235
Plantaginaceae	Plantago ovata	4	Pov_00002653, Pov_00007078, Pov_00024431, Pov_00030944
Plumbaginaceae	Limonium bicolor	4	Lb2G09131, Lb2G09132, Lb4G25635, Lb7G32773
Poaceae	Echinochloa crus-galli	21	AH01.1693, AH01.4516, AH02.1477, AH02.4321, AH03.2822 ... AH04.36, AH05.74, AH08.1783, BH01.1893, BH02.1554, BH02.4350, BH03.2988, BH04.42, BH06.659, CH01.1998, CH01.2000, CH01.5133, CH02.4397, CH04.46, CH05.6, Contig192.154
Poaceae	Eleusine coracana subsp. coracana	9	gene-QOZ80_1AG0044480, gene-QOZ80_1BG0094500 ... gene-QOZ80_3AG0238950, gene-QOZ80_3BG0289060, gene-QOZ80_5AG0389030, gene-QOZ80_9AG0672120, gene-QOZ80_9AG0678040, gene-QOZ80_9BG0695660, gene-QOZ80_9BG0701770
Poaceae	Hordeum vulgare	6	HORVU.MOREX.r3.1HG0070210.1, HORVU.MOREX.r3.3HG0245050.1 ... HORVU.MOREX.r3.4HG0354590.1, HORVU.MOREX.r3.4HG0396210.1, HORVU.MOREX.r3.5HG0465340.1, HORVU.MOREX.r3.6HG0634250.3
Poaceae	Lolium multiflorum	6	gene-QYE76_003690, gene-QYE76_026144, gene-QYE76_049825 ... gene-QYE76_050093, gene-QYE76_065369, gene-QYE76_069687
Poaceae	Oryza coarctata	9	Oco02G029530, Oco03G026400, Oco04G026800, Oco05G006590 ... Oco06G006800, Oco17G011120, Oco18G011040, Oco20G002070, Ocoptg000061lG000330
Poaceae	Oryza sativa	8	LOC_Os01g69010.1, LOC_Os02g58620.1, LOC_Os03g11734.2 ... LOC_Os04g10230.1, LOC_Os05g12790.1, LOC_Os09g37610.1, LOC_Os10g13940.1, LOC_Os12g01580.1
Poaceae	Paspalum vaginatum	5	gene-BS78_02G265000, gene-BS78_03G137400 ... gene-BS78_05G005700, gene-BS78_07G036700, gene-BS78_07G157100
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0101738, Pt_Chr0103621, Pt_Chr0202981, Pt_Chr0205402 ... Pt_Chr0705229
Poaceae	Sporobolus alterniflorus	14	Chr01G027830, Chr03G022780, Chr04G020810, Chr07G010150 ... Chr07G018560, Chr08G019250, Chr12G011600, Chr16G008050, Chr16G008080, Chr16G011480, Chr17G007170, Chr19G011410, Chr27G004730, Chr31G003500
Poaceae	Thinopyrum elongatum	10	Tel1E01G493600, Tel4E01G212700, Tel4E01G416500 ... Tel5E01G262300, Tel5E01G519700, Tel5E01G606600, Tel6E01G788600, Tel6E01G793800, Tel6E01G794400, Tel6E01G794600
Poaceae	Triticum dicoccoides	12	gene_TRIDC1AG045390, gene_TRIDC1BG051360 ... gene_TRIDC3BG003140, gene_TRIDC4AG008380, gene_TRIDC4AG029000, gene_TRIDC4BG021610, gene_TRIDC4BG042770, gene_TRIDC4BG054270, gene_TRIDC5AG025340, gene_TRIDC5BG026500, gene_TRIDC6AG061900, gene_TRIDC6BG068080
Poaceae	Triticum aestivum	16	TraesCS1A02G305200.1, TraesCS1B02G315900.1 ... TraesCS1D02G304800.1, TraesCS4A02G066800.1, TraesCS4A02G180600.2, TraesCS4B02G244400.1, TraesCS4B02G322300.1, TraesCS4D02G131900.1, TraesCS4D02G245000.1, TraesCS5A02G151800.2, TraesCS5B02G150400.2, TraesCS5D02G157000.2, TraesCS6A02G418800.1, TraesCS6B02G470700.2, TraesCS6D02G407900.1, TraesCS7D02G031100.1
Poaceae	Zea mays	7	Zm00001eb008790_P002, Zm00001eb094160_P004 ... Zm00001eb130600_P002, Zm00001eb261140_P001, Zm00001eb262790_P001, Zm00001eb262800_P002, Zm00001eb320990_P001
Poaceae	Zoysia japonica	7	nbis-gene-2463, nbis-gene-25836, nbis-gene-28356 ... nbis-gene-4055, nbis-gene-53325, nbis-gene-8000, nbis-gene-8005
Poaceae	Zoysia macrostachya	6	Zma_g11810, Zma_g1771, Zma_g18651, Zma_g21094, Zma_g24600 ... Zma_g24601
Portulacaceae	Portulaca oleracea	9	evm.TU.LG04.2807, evm.TU.LG08.1716, evm.TU.LG08.1908 ... evm.TU.LG16.853, evm.TU.LG18.515, evm.TU.LG21.804, evm.TU.LG22.645, evm.TU.LG25.1341, evm.TU.LG26.521
Posidoniaceae	Posidonia oceanica	3	gene.Posoc02g00560, gene.Posoc03g06010, gene.Posoc09g03030
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.Scaffold_12_RagTag.21, evm.TU.Scaffold_1_RagTag.1187 ... evm.TU.Scaffold_1_RagTag.1188, evm.TU.Scaffold_2_RagTag.35, evm.TU.Scaffold_2_RagTag.584, evm.TU.Scaffold_2_RagTag.585, evm.TU.Scaffold_8_RagTag.1406
Rhizophoraceae	Carallia pectinifolia	9	nbisL1-mrna-16961, nbisL1-mrna-18944, nbisL1-mrna-24780 ... nbisL1-mrna-26, nbisL1-mrna-29972, nbisL1-mrna-46, nbisL1-mrna-4619, nbisL1-mrna-6427, nbisL1-mrna-9221
Rhizophoraceae	Ceriops tagal	7	nbisL1-mrna-10321, nbisL1-mrna-13394, nbisL1-mrna-20064 ... nbisL1-mrna-290, nbisL1-mrna-6057, nbisL1-mrna-7188, nbisL1-mrna-8046
Rhizophoraceae	Ceriops zippeliana	8	nbisL1-mrna-11660, nbisL1-mrna-15256, nbisL1-mrna-16410 ... nbisL1-mrna-19339, nbisL1-mrna-4239, nbisL1-mrna-9303, nbisL1-mrna-9304, nbisL1-mrna-9610
Rhizophoraceae	Kandelia candel	7	evm.TU.utg000009l.1218, evm.TU.utg000009l.992 ... evm.TU.utg000011l.1331, evm.TU.utg000015l.633, evm.TU.utg000016l.791, evm.TU.utg000018l.183, evm.TU.utg000027l.556
Rhizophoraceae	Kandelia obovata	7	Maker00003211, Maker00005519, Maker00005701, Maker00007375 ... Maker00015211, Maker00016415, Maker00017949
Rhizophoraceae	Rhizophora apiculata	7	nbisL1-mrna-10974, nbisL1-mrna-14084, nbisL1-mrna-15712 ... nbisL1-mrna-2661, nbisL1-mrna-4533, nbisL1-mrna-5439, nbisL1-mrna-9524
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-11566, nbisL1-mrna-13385, nbisL1-mrna-16662 ... nbisL1-mrna-20752, nbisL1-mrna-24134, nbisL1-mrna-2942
Salicaceae	Populus euphratica	7	populus_peu01862, populus_peu08611, populus_peu14045 ... populus_peu25375, populus_peu35880, populus_peu35954, populus_peu36727
Solanaceae	Lycium barbarum	7	gene-LOC132599384, gene-LOC132606987, gene-LOC132622836 ... gene-LOC132626459, gene-LOC132626461, gene-LOC132643573, gene-LOC132644657
Solanaceae	Solanum chilense	6	SOLCI000129500, SOLCI000220800, SOLCI000353900 ... SOLCI003143200, SOLCI003416500, SOLCI004629800
Solanaceae	Solanum pennellii	6	gene-LOC107001117, gene-LOC107002674, gene-LOC107003322 ... gene-LOC107011488, gene-LOC107014411, gene-LOC107015517
Tamaricaceae	Reaumuria soongarica	6	STRG.2015_chr01_-, gene_11733, gene_11734, gene_12194 ... gene_12290, gene_6064
Tamaricaceae	Tamarix chinensis	5	TC01G0032, TC02G3699, TC05G1281, TC05G2759, TC12G0827
Zosteraceae	Zostera marina	2	Zosma01g07610.v3.1, Zosma01g15970.v3.1