HalophFGD

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Basic Information
Locus ID: AH01.168
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description: Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
Chromosome Start End Strand ID
AH01 1507406 1513851 + AH01.168
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.51 166,327.44 Da 46.50 81.06 -0.43
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd09272 RNase_HI_RT_Ty1 1246 1385 1.38524E-69 -
CDD cd00195 UBCc 1402 1495 1.70647E-46 IPR000608
Pfam PF14223 gag-polypeptide of LTR copia-type 113 245 3.7E-13 -
Pfam PF13961 Domain of unknown function (DUF4219) 79 105 1.8E-8 IPR025314
Pfam PF07727 Reverse transcriptase (RNA-dependent DNA polymerase) 1006 1162 1.6E-48 IPR013103
Pfam PF00179 Ubiquitin-conjugating enzyme 1401 1494 2.5E-36 IPR000608
Pfam PF13976 GAG-pre-integrase domain 494 561 4.8E-15 IPR025724
Pfam PF07727 Reverse transcriptase (RNA-dependent DNA polymerase) 963 1005 9.3E-10 IPR013103
Pfam PF00665 Integrase core domain 576 676 2.4E-12 IPR001584
SUPERFAMILY SSF53098 Ribonuclease H-like 593 739 9.74E-40 IPR012337
SUPERFAMILY SSF54495 UBC-like 1402 1500 1.17E-40 IPR016135
SUPERFAMILY SSF56672 DNA/RNA polymerases 963 1352 4.89E-19 IPR043502
Gene3D G3DSA:3.30.420.10 - 568 770 1.9E-42 IPR036397
Gene3D G3DSA:3.10.110.10 Ubiquitin Conjugating Enzyme 1397 1502 3.5E-44 IPR016135
SMART SM00212 ubc_7 1354 1500 5.4E-42 -
ProSiteProfiles PS50127 Ubiquitin-conjugating (UBC) core domain profile. 1342 1500 38.452072 IPR000608
ProSiteProfiles PS50994 Integrase catalytic domain profile. 563 739 25.241421 IPR001584
ProSitePatterns PS00183 Ubiquitin-conjugating (UBC) active site signature. 1427 1442 - IPR023313
MobiDBLite mobidb-lite consensus disorder prediction 862 877 - -
MobiDBLite mobidb-lite consensus disorder prediction 843 877 - -
MobiDBLite mobidb-lite consensus disorder prediction 271 325 - -
MobiDBLite mobidb-lite consensus disorder prediction 1 60 - -
MobiDBLite mobidb-lite consensus disorder prediction 39 54 - -
MobiDBLite mobidb-lite consensus disorder prediction 12 35 - -
Gene Ontology
Biological Process:
GO:0015074 (DNA integration)
Molecular Function:
GO:0003676 (nucleic acid binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT2G02760.1 ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. 1.27E-59
RefSeq XP_040254454.2 LOW QUALITY PROTEIN: uncharacterized protein LOC109774810 [Aegilops tauschii subsp. strangulata] 0
Swiss-Prot P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 7.19E-168
TrEMBL A0A835C8U6 Uncharacterized protein OS=Digitaria exilis OX=1010633 GN=HU200_023360 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Asteraceae Flaveria trinervia 4 Ftri18G33038, Ftri6G26243, Ftri6G34149, FtriNA26240
Brassicaceae Brassica nigra 3 BniB02g044040.2N, BniB05g046390.2N, BniB07g028240.2N
Plantaginaceae Plantago ovata 2 Pov_00029076, Pov_00039561
Poaceae Echinochloa crus-galli 7 AH01.168, AH01.4944, AH04.1262, AH05.424, AH07.1449 ...
CH03.241, CH08.965
Poaceae Eleusine coracana subsp. coracana 85 gene-QOZ80_1AG0019300, gene-QOZ80_1AG0021820 ...
gene-QOZ80_1AG0024230, gene-QOZ80_1AG0037390, gene-QOZ80_1BG0049180, gene-QOZ80_1BG0085100, gene-QOZ80_2AG0105550, gene-QOZ80_2AG0133820, gene-QOZ80_2AG0148240, gene-QOZ80_2BG0158440, gene-QOZ80_2BG0169390, gene-QOZ80_2BG0181270, gene-QOZ80_2BG0183300, gene-QOZ80_2BG0199500, gene-QOZ80_2BG0201130, gene-QOZ80_2BG0205470, gene-QOZ80_2BG0206350, gene-QOZ80_3AG0208060, gene-QOZ80_3AG0220240, gene-QOZ80_3AG0224320, gene-QOZ80_3AG0225270, gene-QOZ80_3AG0227500, gene-QOZ80_3AG0235790, gene-QOZ80_3AG0243220, gene-QOZ80_3AG0244010, gene-QOZ80_3AG0245460, gene-QOZ80_3BG0256980, gene-QOZ80_3BG0283640, gene-QOZ80_4AG0323660, gene-QOZ80_4BG0329460, gene-QOZ80_4BG0330660, gene-QOZ80_4BG0330910, gene-QOZ80_4BG0332300, gene-QOZ80_4BG0350850, gene-QOZ80_5AG0362120, gene-QOZ80_5AG0362550, gene-QOZ80_5AG0365140, gene-QOZ80_5AG0388210, gene-QOZ80_5AG0395900, gene-QOZ80_5AG0398000, gene-QOZ80_5AG0407020, gene-QOZ80_5BG0416820, gene-QOZ80_5BG0421890, gene-QOZ80_5BG0426390, gene-QOZ80_5BG0429910, gene-QOZ80_5BG0452680, gene-QOZ80_5BG0453400, gene-QOZ80_5BG0455110, gene-QOZ80_5BG0456990, gene-QOZ80_6AG0507950, gene-QOZ80_6AG0522670, gene-QOZ80_6AG0526690, gene-QOZ80_6AG0534700, gene-QOZ80_6BG0459300, gene-QOZ80_6BG0460940, gene-QOZ80_6BG0494750, gene-QOZ80_6BG0496090, gene-QOZ80_6BG0502860, gene-QOZ80_7AG0560080, gene-QOZ80_7AG0575580, gene-QOZ80_7BG0584000, gene-QOZ80_7BG0585870, gene-QOZ80_7BG0595270, gene-QOZ80_7BG0595920, gene-QOZ80_7BG0598960, gene-QOZ80_8AG0618400, gene-QOZ80_8AG0619760, gene-QOZ80_8AG0620590, gene-QOZ80_8AG0639870, gene-QOZ80_8BG0656020, gene-QOZ80_8BG0665070, gene-QOZ80_9AG0670230, gene-QOZ80_9AG0673270, gene-QOZ80_9AG0674220, gene-QOZ80_9AG0675740, gene-QOZ80_9AG0681710, gene-QOZ80_9BG0694080, gene-QOZ80_9BG0701040, gene-QOZ80_9BG0709940, gene-QOZ80_9BG0711120, gene-QOZ80_9BG0711600, gene-QOZ80_UnG0724950, gene-QOZ80_UnG0726010, gene-QOZ80_UnG0726990, gene-QOZ80_UnG0730010
Poaceae Lolium multiflorum 12 gene-QYE76_002090, gene-QYE76_004107, gene-QYE76_010998 ...
gene-QYE76_013193, gene-QYE76_029165, gene-QYE76_037880, gene-QYE76_051587, gene-QYE76_052644, gene-QYE76_053432, gene-QYE76_056804, gene-QYE76_058369, gene-QYE76_066013
Poaceae Oryza coarctata 2 Oco06G010700, Oco21G004780
Poaceae Sporobolus alterniflorus 17 Chr01G029280, Chr04G018110, Chr04G029980, Chr05G019600 ...
Chr05G026820, Chr08G012260, Chr0G001440, Chr11G014150, Chr12G014230, Chr15G010750, Chr19G011560, Chr20G012820, Chr22G007660, Chr24G012860, Chr26G013550, Chr27G000450, Chr30G002280
Poaceae Zoysia japonica 66 nbis-gene-12256, nbis-gene-12257, nbis-gene-1525 ...
nbis-gene-1526, nbis-gene-16914, nbis-gene-17541, nbis-gene-19679, nbis-gene-24621, nbis-gene-27637, nbis-gene-27673, nbis-gene-27674, nbis-gene-33940, nbis-gene-33941, nbis-gene-34280, nbis-gene-34281, nbis-gene-34507, nbis-gene-39486, nbis-gene-39685, nbis-gene-40438, nbis-gene-40687, nbis-gene-41962, nbis-gene-43787, nbis-gene-44380, nbis-gene-44391, nbis-gene-44606, nbis-gene-46358, nbis-gene-46929, nbis-gene-48847, nbis-gene-49079, nbis-gene-50718, nbis-gene-50802, nbis-gene-50849, nbis-gene-51475, nbis-gene-51633, nbis-gene-52384, nbis-gene-52833, nbis-gene-52891, nbis-gene-52892, nbis-gene-53916, nbis-gene-53917, nbis-gene-54339, nbis-gene-54582, nbis-gene-54696, nbis-gene-55542, nbis-gene-55996, nbis-gene-56037, nbis-gene-56213, nbis-gene-56371, nbis-gene-56891, nbis-gene-56941, nbis-gene-56960, nbis-gene-57547, nbis-gene-57579, nbis-gene-57604, nbis-gene-57883, nbis-gene-58199, nbis-gene-58243, nbis-gene-58244, nbis-gene-58280, nbis-gene-58281, nbis-gene-58288, nbis-gene-58660, nbis-gene-59066, nbis-gene-59072, nbis-gene-6411, nbis-gene-643
Poaceae Zoysia macrostachya 1 Zma_g3359
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