Basic Information
Locus ID:
AH01.1679
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 15450384 | 15455799 | - | AH01.1679 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.12 | 58,105.43 Da | 74.54 | 54.72 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 283 | 347 | 5.14E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 265 | 345 | 1.4E-8 | IPR013083 |
| SMART | SM00184 | ring_2 | 284 | 342 | 3.6E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 284 | 343 | 10.246822 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 479 | 523 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 61 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14180.2 | RING/U-box superfamily protein. | 1.15E-21 |
| RefSeq | XP_004982695.1 | uncharacterized protein LOC101764453 [Setaria italica] | 8.17E-284 |
| TrEMBL | K4A9P4 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101764453 PE=4 SV=1 | 1.85E-282 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg34786, jg9327 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3798 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah013210 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g153600 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42254, Sbi_jg44840 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27279 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002129 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35632, Sgl40969 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000002477, gene:ENSEOMG00000015659 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0000850, CQ.Regalona.r1.6BG0000820 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30027550, pistato.v30089760 |
| Apiaceae | Apium graveolens | 1 | AgUnG00032 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G007610, COCNU_04G011870, COCNU_16G005260 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103700892, gene-LOC103702211, gene-LOC103709662 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1681.V1.1, AsparagusV1_07.799.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G33775, Ftri9G23806 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G14180.1, AT5G18260.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10008532m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g12520.v2.2, Sp6g26050.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g009260.2N, BniB02g044530.2N, BniB06g039210.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0145 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0135 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g05500 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g06610 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-7940 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.2091 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027129 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.1679, AH01.2084, BH01.1877, BH01.2448, CH01.1984 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0123870, gene-QOZ80_2BG0179490 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0614800.1 |
| Poaceae | Oryza coarctata | 4 | Oco05G012470, Oco06G014000, Oco19G003950, Oco20G003900 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g20980.1, LOC_Os10g26610.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G242700, gene-BS78_01G367800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0203299, Pt_Chr0203305 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G033710, Chr04G010360, Chr06G014370, Chr07G001530 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G546900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG045910, gene_TRIDC6BG053540 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G305100.2, TraesCS6B02G333400.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb015540_P002, Zm00001eb223270_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-27920, nbis-gene-3419 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13209, Zma_g3713 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.227, evm.TU.LG12.1478 |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc02g23670, gene.Posoc02g28240, gene.Posoc04g22610 ... |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.395, evm.TU.Scaffold_2_RagTag.1854 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3239, nbisL1-mrna-7793 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16097, nbisL1-mrna-9596 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13853 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.181, evm.TU.utg000012l.238 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005359, Maker00010984 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12859, nbisL1-mrna-8560 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16330, nbisL1-mrna-542 |
| Salicaceae | Populus euphratica | 3 | populus_peu16099, populus_peu19407, populus_peu19419 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642066 |
| Solanaceae | Solanum chilense | 1 | SOLCI002113300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019199 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.14094_chr05_-, STRG.29365_chr10_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3336, TC03G0726 |
| Zosteraceae | Zostera marina | 1 | Zosma01g04080.v3.1 |