Basic Information
Locus ID:
AH01.1356
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc knuckle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 12149982 | 12154025 | - | AH01.1356 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 73,843.94 Da | 55.27 | 57.48 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 260 | 301 | 5.01489E-12 | - |
| Pfam | PF08783 | DWNN domain | 4 | 81 | 2.0E-17 | IPR014891 |
| Pfam | PF13696 | Zinc knuckle | 170 | 188 | 1.9E-7 | IPR025829 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 169 | 216 | 1.16E-7 | IPR036875 |
| SUPERFAMILY | SSF57850 | RING/U-box | 256 | 324 | 1.24E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 248 | 335 | 5.2E-11 | IPR013083 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 85 | 5.2E-16 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 194 | 237 | 2.3E-10 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 166 | 193 | 4.7E-5 | - |
| SMART | SM00343 | c2hcfinal6 | 200 | 216 | 0.047 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 174 | 190 | 0.073 | IPR001878 |
| SMART | SM01180 | DWNN_2 | 4 | 82 | 1.1E-24 | IPR014891 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 201 | 215 | 8.581337 | IPR001878 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 4 | 82 | 13.576106 | IPR014891 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 591 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 634 | 662 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 675 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 592 | 628 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 574 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.3 | DWNN domain, a CCHC-type zinc finger. | 2.33E-44 |
| RefSeq | XP_034572689.1 | E3 ubiquitin ligase PQT3-like [Setaria viridis] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 4.41E-42 | |
| TrEMBL | A0A3L6TPL0 | DWNN domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM01G33390 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology