halophFGD

Basic Information

Locus ID: AH01.1225

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Uncharacterised MFS-type transporter YbfB

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH01	10851565	10863975	+	AH01.1225

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.49	86,024.12 Da	48.56	93.73	0.24

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00083	Sugar (and other) transporter	351	517	2.7E-25	IPR005828
Pfam	PF00083	Sugar (and other) transporter	629	771	9.9E-13	IPR005828
SUPERFAMILY	SSF103473	MFS general substrate transporter	300	771	1.7E-65	IPR036259
Gene3D	G3DSA:1.20.1250.20	MFS general substrate transporter like domains	310	772	5.6E-80	IPR036259
ProSiteProfiles	PS50850	Major facilitator superfamily (MFS) profile.	315	767	34.836205	IPR020846

Gene Ontology

Biological Process:

GO:0055085 (transmembrane transport)

Molecular Function:

GO:0022857 (transmembrane transporter activity)

Cellular Component:

GO:0016020 (membrane)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G13050.1	Major facilitator superfamily protein.	2.0E-164
RefSeq	XP_025796440.1	organic cation/carnitine transporter 7-like isoform X1 [Panicum hallii]	9.580000016383E-316
Swiss-Prot	Q940M4	Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1	1.92E-163
TrEMBL	A0A2T7C3F2	MFS domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G153700 PE=4 SV=1	1.0800000001389E-314

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg15290, jg17940, jg3762, jg3763, jg3764
Aizoaceae	Mesembryanthemum crystallinum	5	gene_6600, gene_6601, gene_6602, gene_6603, gene_7682
Amaranthaceae	Atriplex hortensis	5	Ah007662, Ah007663, Ah007667, Ah007678, Ah028569
Amaranthaceae	Beta vulgaris	4	BVRB_4g085370, BVRB_4g085390, BVRB_4g085410, BVRB_6g139640
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg19117, Sbi_jg19119, Sbi_jg19120, Sbi_jg26764 ... Sbi_jg33796, Sbi_jg37539, Sbi_jg37540, Sbi_jg37541
Amaranthaceae	Salicornia europaea	4	Seu_jg5381, Seu_jg5382, Seu_jg5383, Seu_jg8490
Amaranthaceae	Suaeda aralocaspica	7	GOSA_00004036, GOSA_00011723, GOSA_00012374, GOSA_00012375 ... GOSA_00019904, GOSA_00019905, GOSA_00022776
Amaranthaceae	Suaeda glauca	12	Sgl20521, Sgl21477, Sgl21556, Sgl21563, Sgl22543, Sgl22611 ... Sgl25896, Sgl26878, Sgl26881, Sgl27725, Sgl73629, Sgl77092
Amaranthaceae	Chenopodium album	9	gene:ENSEOMG00000008059, gene:ENSEOMG00000009625 ... gene:ENSEOMG00000010524, gene:ENSEOMG00000027856, gene:ENSEOMG00000028879, gene:ENSEOMG00000039100, gene:ENSEOMG00000039213, gene:ENSEOMG00000041058, gene:ENSEOMG00000043125
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.4AG0017680, CQ.Regalona.r1.4AG0017700 ... CQ.Regalona.r1.4AG0017720, CQ.Regalona.r1.4BG0018080, CQ.Regalona.r1.4BG0018120, CQ.Regalona.r1.4BG0018160, CQ.Regalona.r1.6AG0010370, CQ.Regalona.r1.7AG0008030
Anacardiaceae	Pistacia vera	7	pistato.v30060590, pistato.v30060620, pistato.v30262020 ... pistato.v30262040, pistato.v30262050, pistato.v30262550, pistato.v30262560
Apiaceae	Apium graveolens	3	Ag10G02395, Ag1G01113, Ag2G02222
Arecaceae	Cocos nucifera	2	COCNU_11G009960, scaffold015412G000010
Arecaceae	Phoenix dactylifera	3	gene-LOC103699607, gene-LOC103712261, gene-LOC113462818
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.3565.V1.1, AsparagusV1_05.3582.V1.1
Asteraceae	Flaveria trinervia	4	Ftri11G08393, Ftri15G26046, Ftri4G15211, Ftri7G05972
Brassicaceae	Arabidopsis thaliana	1	AT3G13050.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10020555m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp3g11200.v2.2
Brassicaceae	Brassica nigra	2	BniB07g026710.2N, BniB07g055860.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq02G1023
Casuarinaceae	Casuarina glauca	1	Cgl02G1072
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno06g05750
Dunaliellaceae	Dunaliella salina	1	Dusal.0984s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	6	gene.Thate06g05170, gene.Thate06g05180, gene.Thate06g05190 ... gene.Thate06g05200, gene.Thate06g05210, gene.Thate06g05230
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-3743, nbisL1-mrna-8158, nbisL1-mrna-8704 ... nbisL1-mrna-8705
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG07.625, evm.TU.LG07.626, evm.TU.LG09.1007
Plantaginaceae	Plantago ovata	11	Pov_00003931, Pov_00003935, Pov_00003936, Pov_00003937 ... Pov_00003938, Pov_00003939, Pov_00019448, Pov_00019868, Pov_00032830, Pov_00039516, Pov_00039517
Plumbaginaceae	Limonium bicolor	1	Lb4G22598
Poaceae	Echinochloa crus-galli	17	AH01.1225, AH01.1226, AH01.1972, AH01.2264, AH03.2915 ... BH01.1497, BH01.2272, BH01.2633, BH03.3086, BH03.3623, CH01.2367, CH01.2801, CH03.3279, CH03.3824, CH03.3825, CH06.2622, CH06.2623
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_2AG0122790, gene-QOZ80_2AG0125740 ... gene-QOZ80_2BG0178120, gene-QOZ80_2BG0181460, gene-QOZ80_3AG0224730, gene-QOZ80_3AG0224750, gene-QOZ80_3BG0269980, gene-QOZ80_6AG0526200, gene-QOZ80_6BG0480100, gene-QOZ80_7BG0604810, gene-QOZ80_7BG0604820
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0132930.3, HORVU.MOREX.r3.2HG0191960.1 ... HORVU.MOREX.r3.5HG0505710.1, HORVU.MOREX.r3.5HG0508840.1, HORVU.MOREX.r3.5HG0508860.2
Poaceae	Lolium multiflorum	6	gene-QYE76_014138, gene-QYE76_040538, gene-QYE76_046229 ... gene-QYE76_063497, gene-QYE76_063498, gene-QYE76_063500
Poaceae	Oryza coarctata	7	Oco05G018680, Oco06G019460, Oco07G015550, Oco08G015000 ... Oco14G011240, Oco17G011780, Oco18G011660
Poaceae	Oryza sativa	4	LOC_Os03g43720.3, LOC_Os04g51970.2, LOC_Os07g38400.1 ... LOC_Os09g38690.1
Poaceae	Paspalum vaginatum	7	gene-BS78_01G146800, gene-BS78_01G146900, gene-BS78_K281500 ... gene-BS78_01G223900, gene-BS78_01G238100, gene-BS78_02G271500, gene-BS78_02G321600
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0104461, Pt_Chr0304496, Pt_Chr0304574, Pt_Chr0700164 ... Pt_Chr0700352
Poaceae	Sporobolus alterniflorus	11	Chr01G009670, Chr07G023490, Chr09G009970, Chr10G006270 ... Chr11G013200, Chr12G027350, Chr13G015160, Chr13G015170, Chr15G016850, Chr24G010670, Chr28G009890
Poaceae	Thinopyrum elongatum	4	Tel2E01G728000, Tel5E01G579600, Tel5E01G600100 ... Tel5E01G600200
Poaceae	Triticum dicoccoides	10	gene_TRIDC2AG025380, gene_TRIDC2AG061680 ... gene_TRIDC2BG029820, gene_TRIDC2BG065550, gene_TRIDC5AG053090, gene_TRIDC5AG055170, gene_TRIDC5AG055180, gene_TRIDC5BG057180, gene_TRIDC5BG059180, gene_TRIDC5BG059190
Poaceae	Triticum aestivum	16	TraesCS2A02G197300.1, TraesCS2A02G428400.1 ... TraesCS2B02G224800.1, TraesCS2B02G449100.2, TraesCS2D02G205200.1, TraesCS2D02G426500.1, TraesCS4B02G384200.1, TraesCS5A02G363300.1, TraesCS5A02G376900.1, TraesCS5A02G377000.3, TraesCS5B02G365400.2, TraesCS5B02G380500.1, TraesCS5B02G380600.2, TraesCS5D02G372500.1, TraesCS5D02G386900.1, TraesCS5D02G387000.2
Poaceae	Zea mays	6	Zm00001eb028020_P002, Zm00001eb050840_P001 ... Zm00001eb050850_P003, Zm00001eb104660_P002, Zm00001eb107320_P002, Zm00001eb222640_P003
Poaceae	Zoysia japonica	7	nbis-gene-27444, nbis-gene-31899, nbis-gene-39643 ... nbis-gene-39645, nbis-gene-48049, nbis-gene-50727, nbis-gene-57567
Poaceae	Zoysia macrostachya	9	Zma_g13304, Zma_g15970, Zma_g16100, Zma_g16101, Zma_g29892 ... Zma_g32081, Zma_g3218, Zma_g896, Zma_g897
Portulacaceae	Portulaca oleracea	8	evm.TU.LG01.2172, evm.TU.LG03.1195, evm.TU.LG03.1196 ... evm.TU.LG03.2099, evm.TU.LG12.532, evm.TU.LG14.1369, evm.TU.LG14.401, evm.TU.LG24.492
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g16160
Rhizophoraceae	Bruguiera sexangula	9	evm.TU.Scaffold_13_RagTag.1079, evm.TU.Scaffold_6_RagTag.54 ... evm.TU.Scaffold_13_RagTag.1080, evm.TU.Scaffold_13_RagTag.1084, evm.TU.Scaffold_1_RagTag.2122, evm.TU.Scaffold_1_RagTag.2124, evm.TU.Scaffold_3_RagTag.1957, evm.TU.Scaffold_3_RagTag.1958, evm.TU.Scaffold_3_RagTag.1964
Rhizophoraceae	Carallia pectinifolia	5	nbisL1-mrna-14856, nbisL1-mrna-14857, nbisL1-mrna-29937 ... nbisL1-mrna-29943, nbisL1-mrna-29944
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-10468, nbisL1-mrna-16946, nbisL1-mrna-17896 ... nbisL1-mrna-20585, nbisL1-mrna-581
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-16444, nbisL1-mrna-16447, nbisL1-mrna-3412 ... nbisL1-mrna-5091
Rhizophoraceae	Kandelia candel	7	add.evm.TU.utg000016l.71, evm.TU.utg000008l.1388 ... evm.TU.utg000011l.39, evm.TU.utg000015l.652, evm.TU.utg000015l.653, evm.TU.utg000015l.657, evm.TU.utg000019l.40
Rhizophoraceae	Kandelia obovata	7	Maker00001166, Maker00001752, Maker00007833, Maker00015431 ... Maker00015535, Maker00015860, Maker00016503
Rhizophoraceae	Rhizophora apiculata	10	nbisL1-mrna-12010, nbisL1-mrna-1791, nbisL1-mrna-18550 ... nbisL1-mrna-18616, nbisL1-mrna-18617, nbisL1-mrna-18618, nbisL1-mrna-18619, nbisL1-mrna-4551, nbisL1-mrna-4552, nbisL1-mrna-4555
Rhizophoraceae	Rhizophora mangle	7	nbisL1-mrna-14057, nbisL1-mrna-14058, nbisL1-mrna-14059 ... nbisL1-mrna-17537, nbisL1-mrna-20718, nbisL1-mrna-22381, nbisL1-mrna-22383
Salicaceae	Populus euphratica	7	populus_peu05906, populus_peu05907, populus_peu05916 ... populus_peu05917, populus_peu23789, populus_peu23790, populus_peu38076
Solanaceae	Lycium barbarum	6	gene-LOC132616932, gene-LOC132618517, gene-LOC132618621 ... gene-LOC132618702, gene-LOC132619227, gene-LOC132633608
Solanaceae	Solanum chilense	2	SOLCI000553500, SOLCI004105000
Solanaceae	Solanum pennellii	2	gene-LOC107025957, gene-LOC107026147
Tamaricaceae	Reaumuria soongarica	1	gene_3213
Tamaricaceae	Tamarix chinensis	1	TC10G2176
Zosteraceae	Zostera marina	1	Zosma03g06770.v3.1