Basic Information
Locus ID:
AH01.1223
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
NEK1
Description:
Kinase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 10796111 | 10799775 | - | AH01.1223 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.28 | 68,340.90 Da | 54.80 | 74.54 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08215 | STKc_Nek | 3 | 258 | 1.53847E-135 | - |
| Pfam | PF00069 | Protein kinase domain | 4 | 257 | 1.0E-61 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 326 | 5.66E-83 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 86 | 311 | 1.7E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 83 | 5.6E-22 | - |
| SMART | SM00220 | serkin_6 | 4 | 258 | 3.9E-79 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 4 | 258 | 44.852142 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 125 | 137 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 10 | 33 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 529 | 545 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 345 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54510.1 | NIMA-related serine/threonine kinase 1. Encodes AtNEK1, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes. | 2.92E-196 |
| RefSeq | XP_012704302.1 | serine/threonine-protein kinase Nek1 isoform X2 [Setaria italica] | 0 |
| Q2QMH1 | Serine/threonine-protein kinase Nek2 OS=Oryza sativa subsp. japonica OX=39947 GN=NEK2 PE=2 SV=1 | 2.03E-293 | |
| TrEMBL | A0A4V6D0W4 | Protein kinase domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G160100v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology