Basic Information
Locus ID:
AH01.1210
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
IAA16
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 10649960 | 10652150 | - | AH01.1210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 28,221.88 Da | 54.82 | 71.56 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 8 | 260 | 4.9E-85 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 150 | 250 | 8.73E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 148 | 262 | 1.7E-44 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 152 | 251 | 25.13739 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 116 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04730.1 | indoleacetic acid-induced protein 16. early auxin-induced (IAA16) | 1.49E-75 |
| RefSeq | XP_004982377.1 | auxin-responsive protein IAA30 isoform X2 [Setaria italica] | 9.43E-117 |
| P0C132 | Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA30 PE=2 SV=1 | 1.28E-92 | |
| TrEMBL | A0A1E5VM03 | Auxin-responsive protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0012811 PE=3 SV=1 | 1.67E-115 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology