Basic Information
Locus ID:
AH01.1193
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH01 | 10495463 | 10503656 | + | AH01.1193 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.69 | 83,808.76 Da | 54.80 | 79.00 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 383 | 435 | 2.29384E-28 | - |
| Pfam | PF12315 | Protein DA1 | 532 | 740 | 2.3E-99 | IPR022087 |
| Pfam | PF00412 | LIM domain | 383 | 438 | 9.9E-11 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 377 | 408 | 3.1E-8 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 409 | 464 | 3.99E-9 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 377 | 457 | 1.3E-16 | - |
| SMART | SM00726 | uim | 284 | 303 | 1.1 | IPR003903 |
| SMART | SM00132 | lim_4 | 382 | 434 | 6.0E-14 | IPR001781 |
| SMART | SM00726 | uim | 315 | 329 | 860.0 | IPR003903 |
| SMART | SM00726 | uim | 333 | 352 | 0.31 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 381 | 441 | 12.701799 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 333 | 352 | 8.630105 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 284 | 303 | 8.814631 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 383 | 417 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 672 | 691 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 672 | 689 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 1.71E-198 |
| RefSeq | XP_039783336.1 | protein DA1-related 1-like isoform X1 [Panicum virgatum] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 1.64E-197 | |
| TrEMBL | A0A2S3IK12 | LIM zinc-binding domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_9G161800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology