export type SkipMap = Record<string, {
    score: number;
    feature: unknown;
    start: number;
    end: number;
    strand: number;
    effectiveStrand: number;
}>;
export interface BinEntry {
    entryDepth: number;
    '-1': number;
    '0': number;
    '1': number;
    avgProbability?: number;
}
type BinType = Record<string, BinEntry>;
export interface BaseCoverageBin {
    refbase?: string;
    depth: number;
    readsCounted: number;
    ref: BinEntry;
    snps: BinType;
    mods: BinType;
    nonmods: BinType;
    delskips: BinType;
    noncov: BinType;
}
export interface PreBinEntry {
    entryDepth: number;
    '-1': number;
    '0': number;
    '1': number;
    probabilities: number[];
}
type PreBinType = Record<string, PreBinEntry>;
export interface PreBaseCoverageBin extends PreBaseCoverageBinSubtypes {
    refbase?: string;
    depth: number;
    readsCounted: number;
    ref: PreBinEntry;
}
export interface PreBaseCoverageBinSubtypes {
    snps: PreBinType;
    mods: PreBinType;
    nonmods: PreBinType;
    delskips: PreBinType;
    noncov: PreBinType;
}
export interface ModificationType {
    type: string;
    base: string;
    strand: string;
}
export interface ModificationTypeWithColor {
    color: string;
    type: string;
    base: string;
    strand: string;
}
export interface ColorBy {
    type: string;
    tag?: string;
    modifications?: {
        twoColor?: boolean;
        isolatedModification?: string;
    };
}
export interface FilterBy {
    flagExclude: number;
    flagInclude: number;
    readName?: string;
    tagFilter?: {
        tag: string;
        value?: string;
    };
}
export interface SortedBy {
    type: string;
    pos: number;
    refName: string;
    assemblyName: string;
    tag?: string;
}
export interface Mismatch {
    qual?: number;
    start: number;
    length: number;
    type: string;
    base: string;
    altbase?: string;
    seq?: string;
    cliplen?: number;
}
export {};